The catch on the Atlas mechanism is that everything - vertically and horizontally - about the motor transfers directly to the worm to worm gear clearance above the tower. No universals, no towers, no end bearings, no nothing. Mess with the motor and frame at your own risk. Nothing else but the motor mount controls that tolerance.
I've been looking at the mechanism for years trying to shorten it, or use it as the basis for a Heisler, and I'm stuck, I'll admit it.
I've tested the second run right beside the first run and both work just fine, actually.
It still ranks in my mind as a mechanism that you modify at your own peril, and I'm amazed it works as well as it does.
Oh, and even getting those worms off the motor without damaging it, yeah, good luck with that. I don't have the machine shop that Gerd does, I've got some of his parts he made for the West Side Heisler, and it's beyond what I can do myself. He drilled holed in the end to pound the shafts out. Yikes.